PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00445.1.g00070.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 90aa    MW: 10243.6 Da    PI: 9.6306
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00445.1.g00070.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.25.9e-301059251
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    ri+n++ rqvtfskRrngi+KKA ELS+LCdaev ++ifsstg+lyey+s
  Zpz_sc00445.1.g00070.1.sm.mkhc 10 RIDNSTSRQVTFSKRRNGIFKKARELSILCDAEVGLVIFSSTGRLYEYAS 59
                                    8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.043161IPR002100Transcription factor, MADS-box
CDDcd002652.41E-44274No hitNo description
SuperFamilySSF554551.06E-33284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003197.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KARELSILCD AEVGLVIFSS TGRLYEYAST  60
SMESVIDRYG RTKEEEQPVA NPNSELKLED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S2e-23183183Myocyte-specific enhancer factor 2B
1tqe_R2e-23183183Myocyte-specific enhancer factor 2B
1tqe_Q2e-23183183Myocyte-specific enhancer factor 2B
1tqe_P2e-23183183Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446622.11e-53hypothetical protein SORBIDRAFT_06g019040
RefseqXP_015636306.16e-53PREDICTED: MADS-box transcription factor 27-like
SwissprotQ6EP493e-53MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0E0PA542e-54A0A0E0PA54_ORYRU; Uncharacterized protein
STRINGLOC_Os04g38770.12e-53(Oryza sativa Japonica Group)
STRINGORGLA04G0120000.12e-53(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.18e-45AGAMOUS-like 21